rs51759939 SNP Detail

Summary

• ID
  rs51759939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57960781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGCTGTC ACCTGGGTGG
  GGTCTAGGGA AGGATAGAGG CTCCAGCCAC ACTTCAGAGA ACTAGGGCAC ATCTGCTCCG
  ATGTCTTCTG CTGACAGAGG CAGGAACTGG GGCCCATAGA GGGGAGTGGA GTTCAAGGTC
  ACTTCAAGGA GAAATGAGAG TGAGTGCAGG GCCCAGCATG GAGCCAGGCC AGGAGAGGCT
  Y
  GGCTTTGTGA TCAGAGGCTA CTGAAGGAAG CAGAAAAGAT GAAGGGTCAA ATGGGGCAGG
  CCTGGAGCAG AAAACTGTCC ATGCCATGGA GATGGCCAGA GTAGATTTTC CCAGAGCAAA
  AGGGCCATGC AAAGAGGGAA CAAAGGCTTC AGCCTACACG GGTCTTTGCT ACATGACCAG
  ACTCCCTTTC TCAAGGCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61406219	NES16780352	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	C	C	C		C	T		C
ss322972691	CHEV_9_57901305	CHEVERUD	SCREENING_POP	f	SNP								T			C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs51759939					SNP	T	C	T	C	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61406219	NES16780352	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57960781 () rs orientation: forward

Symbol	Name	Function Class
Ccdc33	coiled-coil domain containing 33	within coordinates
Rr679845	regulatory region 679845	1236 bp distal
Rr679846	regulatory region 679846	1363 bp distal
Rr679847	regulatory region 679847	within coordinates
Rr679848	regulatory region 679848	221 bp distal
Rr679849	regulatory region 679849	587 bp proximal