rs51760336 SNP Detail

Summary

• ID
  rs51760336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172035560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGA CTTTATACTT ATTCTGTTTC
  Y
  ATAGACAAAT TAAGTCCATA AAGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007373	PARCsnp_1.17765	PARC_SEQ	INBRED	f	SNP	C	T
ss120010273	PARCsnp_1.07404	PARC_SEQ	INBRED	f	SNP	C	T
ss320123213	CHEV_1_174138124	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs51760336					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172035560 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	1901 bp downstream
Cpgi1038	CpG island 1038	1040 bp distal
Gm17224	predicted gene 17224	within coordinates
Pea15a	proliferation and apoptosis adaptor protein 15A	1262 bp upstream
Rr396578	regulatory region 396578	453 bp downstream
Rr423485	regulatory region 423485	1200 bp distal
Rr423486	regulatory region 423486	699 bp distal
Tssr294	transcription start site region 294	1360 bp upstream
Tssr295	transcription start site region 295	1310 bp upstream
Tssr296	transcription start site region 296	1234 bp upstream
Tssr297	transcription start site region 297	1200 bp upstream
Tssr15164	transcription start site region 15164	1328 bp upstream
Tssr15165	transcription start site region 15165	1238 bp upstream
Tssr15166	transcription start site region 15166	1207 bp upstream
Tssr15167	transcription start site region 15167	287 bp upstream