rs51762396 SNP Detail

Summary

• ID
  rs51762396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153065694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAT GGTCAGGAAT AGTGTACTTC
  Y
  GGCCTTAGGC CCCGCCCATG TCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147988171	ENSMUSSNP611046	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51762396					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153065694 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12481	CpG island 12481	1216 bp proximal
Tspyl3	TSPY-like 3	within coordinates
Tssr26887	transcription start site region 26887	1259 bp downstream
Tssr26888	transcription start site region 26888	1603 bp downstream
Tssr26889	transcription start site region 26889	1622 bp downstream