rs51762871 SNP Detail

Summary

• ID
  rs51762871
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8820473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGCTTTT CTATTTCCTT
  TTAATTTTAT TCCTTGGACA CACACACACA CACACACACA CACACACACA CACACACACC
  ATACATAATA CATATATACA CATGTACCAT ATACATATGG AACACACGTC ACTCTCTTCA
  AAATATTGTT CTTGCAGAGA ATACCCAGTT AACCAAAAAG CTGAGAAAGA CACCATTTCA
  R
  CGAATTATCA GACAATAAAT GGTTACTCTG CAGGCCCCAG GTCCCCAGAG GCCTGTAATA
  TGAAGTTCAG AGTCCCAGCC TTCATTCTTA GCATGTGTAG AAATCTTTTA AAATGATTTT
  GTAGATAAAC GGAGGGTGGA AAAACTTTCG AGTTTTACAG TAAAAACTTC TTTTGGCTTA
  CAAAATCTTT TTTTTTTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52141453	NES15242046	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs51762871					SNP	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52141453	NES15242046	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8820473 () rs orientation: forward

Symbol	Name	Function Class
Gm48727	predicted gene, 48727	within coordinates
Gm67475	predicted gene, 67475	within coordinates
Rr427431	regulatory region 427431	243 bp proximal
Rr427432	regulatory region 427432	1126 bp proximal
Tssr96665	transcription start site region 96665	506 bp downstream
Tssr96666	transcription start site region 96666	552 bp downstream