rs51765486 SNP Detail

Summary

• ID
  rs51765486
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:67551964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACC ACACACCTGC AGATTCCTAA
  S
  TTTAGGAGTT ATTGTTTAGA TTTTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148601368	ENSMUSSNP6882519	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321565125	CHEV_5_67785860	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51765486					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:67551964 () rs orientation: forward

Symbol	Name	Function Class
Bend4	BEN domain containing 4	mRNA-UTR
D5Ncnp4	DNA segment, Chr 5, National Center of Neurology and Psychiatry 4	643 bp distal
Rr612661	regulatory region 612661	137 bp distal
Rr612662	regulatory region 612662	188 bp proximal
Tssr46579	transcription start site region 46579	1085 bp upstream
Tssr51234	transcription start site region 51234	262 bp upstream