rs51767965 SNP Detail

Summary

• ID
  rs51767965
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30121156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCGGCTTCA CCCGGGACTC CGGGGACTGT GGGCGGGGCT
  CCGCCTTGAA CCGGGCGTGG CCAAAAGACG AATTTAAAAA CTCGCGGGGG ACCTGGCTTT
  R
  GATCGGGGAC CCGGCGGCGG CTCCGCGGGG CAGGTAGCGA GGCTGGCGCA ACGCCGAGGC
  CGCGGCCCTG GGGGCCCACA GTCTGCATCC AAGAATCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148677497	ENSMUSSNP2103493	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss322134114	CHEV_7_31206750	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51767965					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30121156 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	within coordinates
Cpgi18800	CpG island 18800	1363 bp proximal
Hcst	hematopoietic cell signal transducer	1877 bp upstream
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	1 bp upstream
Rr368301	regulatory region 368301	1789 bp downstream
Rr400239	regulatory region 400239	within coordinates
Rr400240	regulatory region 400240	401 bp upstream
Rr644813	regulatory region 644813	1387 bp distal
Rr644814	regulatory region 644814	within coordinates
Rr644815	regulatory region 644815	185 bp proximal
Rr644816	regulatory region 644816	1054 bp proximal
Tssr2184	transcription start site region 2184	1613 bp upstream
Tssr65713	transcription start site region 65713	1782 bp downstream
Tssr65714	transcription start site region 65714	within coordinates
Tssr65715	transcription start site region 65715	541 bp upstream
Tssr65716	transcription start site region 65716	658 bp upstream
Tssr65717	transcription start site region 65717	702 bp upstream
Tssr65718	transcription start site region 65718	730 bp upstream
Tssr65719	transcription start site region 65719	1535 bp upstream
Tssr65720	transcription start site region 65720	1574 bp upstream
Tssr65721	transcription start site region 65721	1631 bp upstream
Tssr65722	transcription start site region 65722	1650 bp upstream
Tssr65723	transcription start site region 65723	1681 bp upstream
Tssr65724	transcription start site region 65724	1697 bp upstream
Tssr65725	transcription start site region 65725	1869 bp upstream
Tssr65726	transcription start site region 65726	1876 bp upstream
Tssr65727	transcription start site region 65727	1894 bp upstream
Tssr71741	transcription start site region 71741	1955 bp upstream
Tssr71742	transcription start site region 71742	1859 bp upstream
Tssr71743	transcription start site region 71743	1369 bp upstream
Tssr71744	transcription start site region 71744	1358 bp upstream
Tssr71745	transcription start site region 71745	95 bp upstream