rs51768241 SNP Detail

Summary

• ID
  rs51768241
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:92489730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAG AATACTTAGT CTCTGGCACT
  T
  ACCAGGGTGG TGAGCTGCTA CTGAG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss144934171	ENSMUSSNP6749899	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss324480475	CHEV_13_93123177	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs51768241					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92489730 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5933	CpG island 5933	1151 bp proximal
Dhfr	dihydrofolate reductase	1561 bp upstream
Msh3	mutS homolog 3	within coordinates
Rr403896	regulatory region 403896	1278 bp upstream
Rr483661	regulatory region 483661	1014 bp proximal
Rr483662	regulatory region 483662	1295 bp proximal
Rr483663	regulatory region 483663	1445 bp proximal
Rr483664	regulatory region 483664	1753 bp proximal
Tssr120622	transcription start site region 120622	1526 bp upstream
Tssr120623	transcription start site region 120623	1917 bp upstream
Tssr120624	transcription start site region 120624	1964 bp upstream
Tssr120625	transcription start site region 120625	1990 bp upstream
Tssr123429	transcription start site region 123429	1281 bp downstream
Tssr123430	transcription start site region 123430	1721 bp downstream