rs51768554 SNP Detail

Summary

• ID
  rs51768554
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86576324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAACAAACA TTTCAACCTT
  GACTTAAGAA AATCAAACAG GTTCTGCTAC TCGTGTGATC TTGTCAAGGC GACCCATGAT
  TTCGTCATAA GTCAGGACAG GCAGGTAACA CGTGAGAGCC ACAAGTGGCT TTGTCACACC
  AAAGTTTACC TTTGTTCTAG TGAAAATAGT CCTCGACCTA CAGGATAATA AAATAGGAAG
  R
  AAAAAAATTC AAACTAGCAA TTACATTGAT TTTGAAGGAA AAATAAGTAG GAAACTTAAA
  ATGTTTACAC TACATAGCTA TAAATAATCA AATAAAGATT TGTAGAAGTC ACTACAAAAA
  AATTACAAAC TCGCCGGGCG TGGTGGCGCA CGCCTTTAAT CCCAGCACTC GGGAGGCAGA
  GGCAGGCGGA TTTCTGAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136760221	ENSMUSSNP5741090	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51768554					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86576324 () rs orientation: forward

Symbol	Name	Function Class
A330041J22Rik	RIKEN cDNA A330041J22 gene	1189 bp upstream
Cpgi22104	CpG island 22104	942 bp proximal
Me1	malic enzyme 1, NADP(+)-dependent, cytosolic	within coordinates
Rr197818	regulatory region 197818	1124 bp distal
Rr206830	regulatory region 206830	276 bp proximal
Tssr90786	transcription start site region 90786	1369 bp downstream
Tssr90787	transcription start site region 90787	1399 bp downstream
Tssr90788	transcription start site region 90788	1500 bp downstream
Tssr90789	transcription start site region 90789	1567 bp downstream
Tssr90790	transcription start site region 90790	1626 bp downstream