rs51769460 SNP Detail

Summary

• ID
  rs51769460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29578086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCTCAGC AGTTAAGAGC
  ACTTGCTCCT CTTGCAGAGG CCCTGCATTT GGGATTAGTG AGACTTAGTC CTCAGGACTG
  GGCTGGCCTC TGGTGGCAAA CACAGCTGGG GGGTGGGGGA GCTCAGAGGT GCAGGGTTGC
  TGGGCAGGAG GCTCCAGGCT CACAGCTACC ACAGCAGAAA CTCTGCCAGG CACTTTGGGC
  Y
  CCAGGATGGC TCACACTTGA TCCGAGGACA AAGACTAGCT TCAGTGGAGG GTCCTGGCTC
  AGGATCCATG GGAGAGCAAT GAATGAATGG CTTTCCAGCT TGAATGAGCA GAGCAGAGGC
  GCTGGTCACG TGTTCTAGAA ACCCTGAGTG ACCAAGAGGC AGATTTCCCT AGGGTGCTGT
  GATCAGGGGA CCCTGAGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60557932	NES16578217	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51769460					SNP	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60557932	NES16578217	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29578086 () rs orientation: forward

Symbol	Name	Function Class
Fgd2	FYVE, RhoGEF and PH domain containing 2	1792 bp upstream
Rr1771	regulatory region 1771	1234 bp distal
Rr405148	regulatory region 405148	1618 bp upstream
Tssr143531	transcription start site region 143531	1797 bp upstream
Tssr143532	transcription start site region 143532	1811 bp upstream
Tssr143533	transcription start site region 143533	1844 bp upstream
Tssr143534	transcription start site region 143534	1857 bp upstream