rs51769697 SNP Detail

Summary

• ID
  rs51769697
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:98886818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTCTAAG TCACTACCTG
  TTTCTTTTAA AGGCTTGGTG GCTTTTCAAA GTTAATGCAA TCTATTGTCA TTAAAAGAAC
  ACTTTTTTGC CAGCAATTCT TTGCAAACTC TCTGGCTGAG GTCGGCTCTC AGAGGCTTTC
  CCGTCCCCTG TTTTCAGGCG CGCTGCGGAC ACCTCCTTAG CCAGGCCCCG CCGTTGCGCG
  W
  TGCTCAGCAA AGCCAGACGC CTCCCGCTCG CTGCTCCCGA ACCCCGCCCT CCCCGGGCCG
  GGCTCTGGGT ACAGGGCCTC TGGGTTCCTT GAGGGTTGTC CCGGACCACC ATGGGCTCAG
  AGATGGAGCC ACTGCTCCGG GCCTGGAGCT ATTTTAGACG CAGGAAGTTC CAGCTCTGCG
  CCGATCTATG CACGCAGATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss61685131	NES17645803	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs51769697					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61685131	NES17645803	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:98886818 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4974	CpG island 4974	within coordinates
Rr403444	regulatory region 403444	41 bp downstream
Rr470976	regulatory region 470976	within coordinates
Rr470977	regulatory region 470977	128 bp distal
Rr470978	regulatory region 470978	1217 bp proximal
Tssr114655	transcription start site region 114655	6 bp downstream
Tssr114656	transcription start site region 114656	8 bp upstream
Tssr114657	transcription start site region 114657	61 bp upstream
Tssr114658	transcription start site region 114658	85 bp upstream
Ttc8	tetratricopeptide repeat domain 8	15 bp upstream