rs51771670 SNP Detail

Summary

• ID
  rs51771670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150627620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGGATTAA AGTTTTACTT
  AGGTAGGTTG AGTCCTGCCT TGTTAAAAAA AAAAAAAAAA AAAAAAAACC ACCCACCCTT
  TATCTGGAAA ACAAACATTT GCCAAAACTG CCTGAAGGGA AGGTTGTCAC AGAGGACTAA
  GGTCATGCTG AACCTCCTCT TACAGTTTGC TAAGAGAAAA GTTCTTTTAC AGTCCAAGAC
  Y
  ACTGTTATTT GCAATTCCTG TATGCCTTTT TATTGCTACC TGCCTGATAC ATATTATTGA
  AATTATAATG TATTCTTATA TAAAACCATT TGTTTCTGCA ATTTATGTTG CTGTAAACAC
  TCCTAACTAA ACTCCCTTAA TGATTAAGGG ATTCAGAGAC CACTCTGAGA TGGTCCCCTA
  GGCAGGCAGT GTTGCCTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147950559	ENSMUSSNP3238721	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51771670					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150627620 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12412	CpG island 12412	749 bp proximal
Gm30141	predicted gene, 30141	within coordinates
Pygb	brain glycogen phosphorylase	1096 bp upstream
Rr397385	regulatory region 397385	846 bp upstream
Rr567100	regulatory region 567100	1374 bp distal
Rr567101	regulatory region 567101	545 bp proximal
Tssr20709	transcription start site region 20709	1040 bp upstream
Tssr20710	transcription start site region 20710	1106 bp upstream