rs51772019 SNP Detail

Summary

• ID
  rs51772019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:62397433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGG GTGTGGGAGG TCACTGAGTT
  Y
  CTGGGTCATT TCTTGAAAAT GCAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136550941	ENSMUSSNP626025	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss322982751	CHEV_9_62337958	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51772019					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:62397433 () rs orientation: forward

Symbol	Name	Function Class
Coro2b	coronin, actin binding protein, 2B	within coordinates
Cpgi21898	CpG island 21898	1123 bp distal
Rr368794	regulatory region 368794	1113 bp downstream
Rr680797	regulatory region 680797	1129 bp distal
Rr680798	regulatory region 680798	1010 bp proximal