rs51772670 SNP Detail

Summary

• ID
  rs51772670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55066212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGTGCAA GCACCACAAC
  ACGATCCAGC CGCCTTGGAG ATGCCTGTAT CGCGAAGGCT GGGATTGGCA GGCCTGCGCT
  GAAGCGGCCT CCGTTAGGAG CGGCCCGAAA GCGGCTGCCG TCATTCAGGG CTTTCCAGGT
  ACGAACTGCC GACGATAGCG CCCGGGGGGC GAGAAAGTCG GCCTCCCACG TCCGCCTCCC
  Y
  GCTCCCTCCC CGGGAGTCCC CCGGGGCAAG CCGCTCGAGC GAGGCTCTCC GGTCAGAACA
  AGAGAACTCG GAAGCACCAA CAGCCAGCGC GGAACAAAGC GCCGGTCCCG GAGTGCGAGA
  GGACGCCATT ACGCGGGCAG CGGCCTGCGC CGACGAGCCG AGCAGGCCTC GCCGCGCGGC
  CTCGGTCGAG ACCAGAGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349691869	MGP_WTSI_1_55083897	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs51772670					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349691869	MGP_WTSI_1_55083897	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55066212 () rs orientation: forward

Symbol	Name	Function Class
Cpgi259	CpG island 259	within coordinates
Gm71172	predicted gene, 71172	1 bp upstream
Rr371303	regulatory region 371303	within coordinates
Rr411122	regulatory region 411122	1209 bp distal
Rr411123	regulatory region 411123	within coordinates
Rr411124	regulatory region 411124	12 bp proximal
Rr411125	regulatory region 411125	418 bp proximal
Rr411126	regulatory region 411126	465 bp proximal
Rr411127	regulatory region 411127	1789 bp proximal
Sf3b1	splicing factor 3b, subunit 1	within coordinates
Tssr6707	transcription start site region 6707	677 bp downstream
Tssr6708	transcription start site region 6708	544 bp upstream
Tssr11708	transcription start site region 11708	324 bp downstream
Tssr11709	transcription start site region 11709	420 bp downstream