rs51775430 SNP Detail

Summary

• ID
  rs51775430
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70876029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCCTCTT AGAGACTGCT
  GTCCTGGTAT CCCCTGCCAT CCATCCCTTC ATCTCAGCAG TAGACCTCAT GAAAAAACCA
  TGAAGTGGTT CCAAAGCACA CCATACAATA TAAAATTTAT TATAAAACTT CAGCAAATAT
  AAATATCTGG GTTCCTACTG GGAAGGCCCT AAGTGGGGAG ACCAGAAATA AGCACCAATG
  S
  AGAGGGAGAT GGGAGCAGAG GTTGGAGGTG GCCGTGGGCC CTTTCCTTTA TAGGCTATTG
  ACCTTTGCTC TCAGCTCAGA AGTAATCAAA CTTATGGGAT GTATTTAAAA ACCACTCAAC
  ACACAAAACA CAGTCTAGAC CTTAACACTA ACAGCACATT GGCCCCTTGA CTGATTTCTA
  TTACAGGGGA CCCTCACTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52652705	NES15474461	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	C	G		C
ss324416319	CHEV_13_70866788	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51775430					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52652705	NES15474461	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70876029 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	within coordinates
Gm36607	predicted gene, 36607	within coordinates
Rr482287	regulatory region 482287	1165 bp proximal