rs51777643 SNP Detail

Summary

• ID
  rs51777643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42457262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAGAATG GAGTGCAGAG
  CCCCCCTCCC AGCACACCCT GGAGACCCCG CAGGTCCAAG CGCTGTTCCT GTTCTTCCTT
  GATGGACAAG GAGTGTGTCT ACTTCTGCCA CCTGGACATC ATCTGGGTCA ACACTCCCGA
  GTGAGTCTCT AGAGGGCATT GTAACCCTAG CCATCTCTTA CTACTGGGGC TTTCTGGAGC
  Y
  TGGAGAGCCC AGGCTGGAGT TTCTGTTCTG GGAAGCTTCT GTCTTTAGCG TTTCTGAAGA
  CAAAAAACCG TGGCTCCCAA GGGAAACCCT GCTGACTGAG ACAGGTCAGC TTAGTGGTAG
  CAATCTTGGA GAGTGTCTTC TGAGAGGCTG GGGGTAAGGG AGAGTCAGGC TGCTTCCTGT
  GGGACAGATC AGATTGGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52629853	NES15518473	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51777643					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52629853	NES15518473	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42457262 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5505	CpG island 5505	1780 bp distal
Edn1	endothelin 1	within coordinates
Gm47118	predicted gene, 47118	within coordinates
Rr388326	regulatory region 388326	1759 bp downstream
Rr478147	regulatory region 478147	1132 bp distal
Rr478148	regulatory region 478148	38 bp distal
Tssr119442	transcription start site region 119442	1973 bp downstream
Tssr119443	transcription start site region 119443	1952 bp downstream
Tssr119444	transcription start site region 119444	1819 bp downstream
Tssr119445	transcription start site region 119445	1241 bp upstream