rs51778491 SNP Detail

Summary

• ID
  rs51778491
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91177673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATCTCTG GCTGTCCTGG
  AATTCACTAT GTAGACCAGG CCTTCCTCTT GTCTCTGAGC GCCGGGACTG AGGTATGCGC
  CGGAACTCCC GGCCTGAAGT AGATTTTTAA AAGTGCATAT AGGAATATGA GAAATTAAAA
  AAATAAGGAG CAGGAAGAGT GTCCTCACAC CCAGCAGCCA CCTCTAACTA TCCCATGGCC
  Y
  TAACGCAGCT GCAAACCGGT CGGATTCTTT GCGTTCAGGA ATGGTGCCGG GCACAGGAAC
  TTAGCTCCAC CAGCAGGCAC TGCACTAGTA CGATATTCCT AGGGAAGCAA GCCGCTAAAT
  GAATGGAAAC AAACCGGAAG GCCGCTAGGC GGTCGGGGAT GCTTGCGCTT CGGTGACCAA
  TCAGCAAAGG TCTTGACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60767812	NES16403365	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51778491					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60767812	NES16403365	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91177673 () rs orientation: forward

Symbol	Name	Function Class
Cpgi571	CpG island 571	within coordinates
Rr366958	regulatory region 366958	within coordinates
Rr415586	regulatory region 415586	615 bp distal
Rr415587	regulatory region 415587	within coordinates
Rr415588	regulatory region 415588	626 bp proximal
Rr415589	regulatory region 415589	1912 bp proximal
Tssr8065	transcription start site region 8065	242 bp upstream
Tssr8066	transcription start site region 8066	346 bp upstream
Tssr8067	transcription start site region 8067	360 bp upstream
Tssr8068	transcription start site region 8068	531 bp upstream
Tssr8069	transcription start site region 8069	624 bp upstream
Tssr12938	transcription start site region 12938	89 bp downstream
Tssr12939	transcription start site region 12939	1421 bp downstream
Ube2f	ubiquitin-conjugating enzyme E2F (putative)	within coordinates