rs51779475 SNP Detail

Summary

• ID
  rs51779475
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48407802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGCTTCTA ATTTAAGCCT CTCTACCCGT GACTACCCTT
  GAATTCATGT TGAGGAAAAA TGTCCTTTAT CACATTGCCA TTCCCCACCA CCTAACTACA
  M
  CCCCCTTCTG TTTTGTTTTG TTTTGTTTTA GAAATATCTA TAGACTCCCA ATCTTTGGGG
  GTGGAGTGTC TCATTTTGTA CCTCTGACTA TCTTGAAGT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136454987	ENSMUSSNP5487029	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51779475					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48407802 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	145 bp upstream
Cpgi21716	CpG island 21716	482 bp distal
Gm5617	predicted gene 5617	530 bp downstream
Gm70225	predicted gene, 70225	within coordinates
Rbm7	RNA binding motif protein 7	1203 bp upstream
Rr195326	regulatory region 195326	199 bp proximal
Rr206379	regulatory region 206379	1 bp distal
Rr401354	regulatory region 401354	984 bp downstream
Tssr2862	transcription start site region 2862	604 bp upstream
Tssr84988	transcription start site region 84988	1445 bp downstream
Tssr84989	transcription start site region 84989	1387 bp downstream
Tssr84990	transcription start site region 84990	1282 bp downstream
Tssr84991	transcription start site region 84991	1236 bp downstream
Tssr84992	transcription start site region 84992	1102 bp downstream
Tssr84993	transcription start site region 84993	1051 bp downstream
Tssr84994	transcription start site region 84994	592 bp downstream
Tssr89393	transcription start site region 89393	1513 bp upstream
Tssr89394	transcription start site region 89394	1229 bp upstream
Tssr89395	transcription start site region 89395	1184 bp upstream
Tssr89396	transcription start site region 89396	1167 bp upstream