rs51780431 SNP Detail

Summary

• ID
  rs51780431
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:176719046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTAAACC TAGAGAAATT
  ATTTGCATAG AGATTTCTTT AGAGAAAATA ACCAAATGGT AAAAGGTATA TGAAAGGACA
  CTTACCATTA ACTGTCAGAG GGATGTAACA AAACTCATGT GAGATACCAC ACTACATCTC
  ATAACCAATT GGTAAAAGGC ATATGAAAGG ACACTTACCA TTAACTGGCA GAGGGACATG
  R
  CCAAACTCAT GTGAGAATCC ATACCACATC TCATAAACAT AGCTCTAATT TAAAAGACAA
  TAATAATAGG CTGGTGAGGT GGCTCAGTAG TCAGAAACAC TTGTCATGCC AGCCTGGGGG
  TCTGAGCCCA TGCCTGGAAC CCATGGTGGA AGGAGAGAAT AGACTCCCGA AAGTTGTCCT
  CTGATTTCCA CATGTACACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60349112	NES15853493	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51780431					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60349112	NES15853493	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176719046 () rs orientation: forward

Symbol	Name	Function Class
Gm37490	predicted gene, 37490	1250 bp downstream
Rr423928	regulatory region 423928	588 bp distal
Sdccag8	serologically defined colon cancer antigen 8	within coordinates