rs51780659 SNP Detail

Summary

• ID
  rs51780659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81342003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTCCCCC AGTGCTAAAC
  CTGCCTCGGT CAACCGACTG TGATGGATGT GACCCAAACT TCCCTGAGAC TTGATCATGA
  GAGGCAGTCT CCACCTAGGC GAAAGTCTGG CCACCCTGAG TCACCACTGT GACAGAGCTG
  GAATGGACAT CGAATGCCAG AATGGGGGAA GACAGCAAGC CTCGGTCAGT GCATGCAGCA
  Y
  AGGGCAGCTG GGAGATGGCA CCCAGTGCCT CTGGTCCCAG CCACCAACCA GTCTTAACCT
  CACTCAGCAA ATCCCCAATC CCTGACCTGG GCATCTGTGA CCCCAGTGCA CAGGAGGAAG
  ATCTGAGTTC TAGGCCAGCC CTGTCTACAG AATTACAGAA TTGAAGGCTA GTCAGAGCTA
  TGCAGTGAGA CCCTACCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292363	NES16908595	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51780659					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292363	NES16908595	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81342003 () rs orientation: forward

Symbol	Name	Function Class
Gm16106	predicted gene 16106	1403 bp downstream
Gm56270	predicted gene, 56270	1451 bp downstream
Gna15	guanine nucleotide binding protein, alpha 15	within coordinates
Rr223625	regulatory region 223625	898 bp distal
Rr223626	regulatory region 223626	1673 bp proximal
Tssr98635	transcription start site region 98635	1897 bp downstream
Tssr98636	transcription start site region 98636	1981 bp downstream