rs51781131 SNP Detail

Summary

• ID
  rs51781131
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:134422785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCAG AGTACTCCCT CAGAGGGTGT
  A
  CCTGTCCTAG GCGGCCCACC CGCCC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145506445	ENSMUSSNP4499551	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss319982688	CHEV_1_136391624	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51781131					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134422785 () rs orientation: forward

Symbol	Name	Function Class
Cpgi770	CpG island 770	within coordinates
Rabif	RAB interacting factor	Intron
Rr396314	regulatory region 396314	282 bp downstream
Rr418927	regulatory region 418927	1296 bp distal
Rr418928	regulatory region 418928	389 bp distal
Rr418929	regulatory region 418929	296 bp distal
Rr418930	regulatory region 418930	124 bp proximal
Tssr8899	transcription start site region 8899	368 bp downstream
Tssr8900	transcription start site region 8900	284 bp downstream
Tssr8901	transcription start site region 8901	31 bp downstream