rs51782894 SNP Detail

Summary

• ID
  rs51782894
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60631473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCAGCTA ATCATTGGAG
  GAAGATCAGA TGCAGTCACT TAAGCCAAAG CCATCAGGAT TTAAATGGGG GGGGGGGCGT
  TGTTGGTAAA AAGAAGCAAA AGCGACTCCT GTTATGAAGG TGCATAGATA AAATGCTCTT
  AGTAGTGAAT ACAACAAACT GATAATTCAC ACGAAGATCT ATGAAAACAT CACCATCGCA
  W
  TCCTATGCTA AAAAAAAAAT TCCTGTATTC TAAATTGTAT TCTTAAATTC TTAAAGTACT
  GATAATTCTC CCCTGGTATA GAAAAATGTT ATTTTAGTAT TTCCACTGCA TTCTTCTGCG
  GATTCTGGCT TTTCTTTTAT GAAAGGGTCT CAACAAACTT GTGTATAGAA AAGCTGACTC
  TCACGGCAGC CTTCAAAAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63529555	NES17015462	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51782894					SNP	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63529555	NES17015462	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60631473 () rs orientation: forward

Symbol	Name	Function Class
Gm48947	predicted gene, 48947	607 bp upstream
Rr303268	regulatory region 303268	128 bp proximal
Rr313850	regulatory region 313850	129 bp proximal