rs51782943 SNP Detail

Summary

• ID
  rs51782943
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88192482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGCATTT GGAAAGGAGG
  ATCAGGAACT CATGGTTACC TTGACTATCC AAGGAGTCCA AGGTCAGCCC AAGCTATGCA
  AGACTGCCTC AAAAACCAAA TAAAACATCT CCCCCACCCC CACAACCAGC GCTCTTAAGA
  CTAAGCCGAG AGGTGTGAAC AGCGTTCTGT CATGACTCAA CTCATGGATT TAACACCGTG
  Y
  TCTCCTGAAG GACACTCACC TACTCAGAAG CAGAAGTGAG GAAGGTGAAG ATGGGGGAGT
  GGGGAGTAGA GACACTGTAA GTAATTCATG TTAAGAGGAA AACTGCCACT GAGAATCCCC
  TGAATAAGAT AAAGAGACAC AGTAATGGCC AAGGCTGGCT AGAGAAGCCC AAGGCACCAA
  CATCCCACAA GAAAGGACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63352317	NES17507682	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	C	T	T	C	T
ss144899315	ENSMUSSNP3370061	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51782943					SNP	C	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63352317	NES17507682	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88192482 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Rr18063	regulatory region 18063	1719 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr12870	transcription start site region 12870	58 bp downstream