rs51783984 SNP Detail

Summary

• ID
  rs51783984
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:12940324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ACTAAAAAGT CTGTCTTTTG AGCTATATGA ATGTCTTCAT
  GCTTTTTCTT ACCCCTCCCA CCCCCTACAG AAGTATGCCG TCATCTTACT GTTCTGCTGT
  T
  GCTTCCTTTT GTTTGCTGAC CTTGGTAGAA TCGAAGGGAC TATCTGGAAG GGTTAAGGAC
  CAGAACAGCA TGGACAAGAA ATCTTAGGTT TTTTTAAAAT T                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss134090510	ENSMUSSNP5132530	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs51783984					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:12940324 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22632	CpG island 22632	998 bp distal
Rr690199	regulatory region 690199	1667 bp distal
Rr690200	regulatory region 690200	792 bp proximal
Tssr160586	transcription start site region 160586	1259 bp downstream
Tssr163013	transcription start site region 163013	1518 bp upstream
Usp9x	ubiquitin specific peptidase 9, X chromosome	within coordinates