rs51786496 SNP Detail

Summary

• ID
  rs51786496
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:65107523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAGAA TTAAAAATGT
  ATACTACCAT GCCTGACTTA ACAAGTCATT TTTTTAAGCA TCAAAGACAA ATGCAACAAT
  AGTAGGTTAT AATCCAGACC CCAGGCCTGT TTGCCACCTC TGGCATAAAG ACTAGAGCAT
  ATAATTTTCC AGCAAGGGGT TACAGGAATG GAGAGTTGTA GATTTATGGA AAGTAAGAAG
  R
  CTAAAAAGAC CAGAGTGGGA AAAGGTTTTG TTATTTCAGA AGAATCTGAA ATCTAGTACA
  TCATATTGCA GGCTACTGTT GTTGGTACAT TGAGGAGGAC AGGGGTCAGT CCCTTATGCT
  CTAGGCAGCA AATCTGGGTA TCAACTCATG GATGTATTAG ATCAGTAGTA TAAAGTTCTT
  AGGTTGGAGA AGTTTCAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52441977	NES15415792	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	G	G	G		A
ss324071939	CHEV_12_66161736	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51786496					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52441977	NES15415792	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:65107523 () rs orientation: forward

Symbol	Name	Function Class
Fkbp3	FK506 binding protein 3	1683 bp downstream
Prpf39	pre-mRNA processing factor 39	within coordinates
Tssr113604	transcription start site region 113604	982 bp upstream