rs51787194 SNP Detail

Summary

• ID
  rs51787194
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:88116040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCAGAATT CTTAGACTAC
  TAAAAAGGAG GGAGAAAAAG AAAGAATTTC AAGATGGATT TTCTTAATAT CTGTCCCAGA
  TTCAACTTTT AAAACAAATA GGCGGAACTC TTAGTTATCT TAGATCTTAA AAGATGAATT
  AGTGCCAGCC AGGGATTCCG CATCTGTGGT TATCGGCTTC CTTGAAATAA AAAACCTGTA
  Y
  ATACAATCTC CAGGTGAATC AGCTTTCCAT TCTTAAGTAC ATTTTACTGC ACCCTAGATT
  TCCAAACAAT TATTTTATTC CCCTTGAAGA GCAATACTGA TGTCATGGAA ATGGTTCCTT
  TAAGCTCCAA AAGTGATAAC ATTACAATTG TACTGCTCGT GACGCATGAC TTTTGATCTA
  AAGTTAATCA TAATGTTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61194221	NES16700738	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs51787194					SNP	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61194221	NES16700738	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:88116040 () rs orientation: forward

Symbol	Name	Function Class
1700066N21Rik	RIKEN cDNA 1700066N21 gene	within coordinates
2310003L06Rik	RIKEN cDNA 2310003L06 gene	1278 bp upstream
BC051076	cDNA sequence BC051076	1829 bp downstream
Gm28434	predicted gene 28434	1336 bp upstream
Rr378253	regulatory region 378253	798 bp upstream
Tssr46962	transcription start site region 46962	1274 bp upstream