rs51789603 SNP Detail

Summary

• ID
  rs51789603
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129914369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGC CATTTAGAAG AAGGATTTAG
  R
  ACCAGTGTTG ACAATGGAGA AAGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60840627	NES16012846	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	A	A	A	A	A		G	A	A	G		A
ss144477301	ENSMUSSNP2651952	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss321692397	CHEV_5_130361399	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51789603					SNP	A	A	G	A	G	A	A	A	A	A	A	G	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60840627	NES16012846	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129914369 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	within coordinates
Cpgi16684	CpG island 16684	1439 bp proximal
Rr399383	regulatory region 399383	1680 bp upstream
Rr621372	regulatory region 621372	677 bp proximal
Rr621373	regulatory region 621373	1932 bp proximal
Tssr53498	transcription start site region 53498	1611 bp downstream
Tssr53499	transcription start site region 53499	1760 bp downstream
Tssr53500	transcription start site region 53500	1888 bp downstream
Tssr53501	transcription start site region 53501	1914 bp downstream