rs51790768 SNP Detail

Summary

• ID
  rs51790768
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:82966340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGGGGT CTTCAGGACC
  TGCCTTTCAG GTAAACGGTT TTCTGGAACA AAGAGTTAGT CTGGGAGAAA TAGCCCCTTG
  TTTCTTCTAC CACAGATAAG AAAGAAAAAC AAAAAACAAA AACCTCAGGG ATTCTGTGGC
  GGGCAGGTTA CCTCCCACGT CCTCTCTGTG AGCGTCACAT AAGTAACACA CATTGCATTG
  Y
  GCAGCTAGGA AAATTAGCAG TCATTGTCTC AAAATTGCCT GAGTTGAAAG GCGTTTTTCT
  TCCTCTAAAT TTCCAGGTAC TCGTGTGTTT GAATAAACAG GTCCTTGAGC AGCGGGTCAC
  TGAGCAGCAC CGCCGCCTTC ATCCCAGGTC TCCAGGTCTC CAATGGCCAC AAATGCCTCT
  GTGGGTCCAG GGGCTCCGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss52389717	NES15267953	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs51790768					SNP	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52389717	NES15267953	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:82966340 () rs orientation: forward

Symbol	Name	Function Class
Chst11	carbohydrate sulfotransferase 11	within coordinates
Gm67967	predicted gene, 67967	within coordinates
Rr435928	regulatory region 435928	315 bp distal
Rr435929	regulatory region 435929	118 bp proximal