rs51790843 SNP Detail

Summary

• ID
  rs51790843
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54816020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTG AGGGTGGAAA GGGGTAAGAC
  A
  TAATAATGAC CAATGATCAA GGAAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss139565786	ENSMUSSNP2347369	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss324638276	CHEV_14_55197400	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51790843					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54816020 () rs orientation: forward

Symbol	Name	Function Class
Ajuba	ajuba LIM protein	1005 bp upstream
Cpgi6463	CpG island 6463	817 bp distal
Gm63340	predicted gene, 63340	within coordinates
Rr389677	regulatory region 389677	481 bp downstream
Rr404101	regulatory region 404101	107 bp downstream
Rr492273	regulatory region 492273	903 bp distal
Rr492274	regulatory region 492274	within coordinates
Rr492275	regulatory region 492275	185 bp distal
Tssr128602	transcription start site region 128602	1065 bp upstream
Tssr128603	transcription start site region 128603	1024 bp upstream
Tssr128604	transcription start site region 128604	1005 bp upstream
Tssr128605	transcription start site region 128605	986 bp upstream
Tssr128606	transcription start site region 128606	951 bp upstream