rs51793290 SNP Detail

Summary

• ID
  rs51793290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118087988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGCT CTGAGACAAG CCTACGGGGC
  Y
  TTTGCTCAGA GGCTCTGAGA CCTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145780865	ENSMUSSNP4623913	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51793290					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118087988 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19620	CpG island 19620	970 bp proximal
Itpripl2	inositol 1,4,5-triphosphate receptor interacting protein-like 2	within coordinates
Rr381380	regulatory region 381380	1207 bp downstream
Rr654485	regulatory region 654485	132 bp distal
Rr654486	regulatory region 654486	222 bp distal
Tssr74439	transcription start site region 74439	1199 bp upstream
Tssr74440	transcription start site region 74440	477 bp upstream