rs51794764 SNP Detail

Summary

• ID
  rs51794764
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135777490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGACCATG GCTTCAGTAG GAGGGCTCTG
  CTGTGTGTGA CAGTTAGAAC ACTAATATGT CTCCAAATTC TGGCTCCCCA AAGGGACAAC
  TGGGAGAATC TTGGGTCCTG GAGTCCATGC TCTGGTCTGC AATAACCTCC TTTTTTTTCA
  Y
  GTGGCCTGGT ACTGCTTGCC CTGTAGTTTC CAAGAGACAG ATGAGCTAAC ACGTAAAACA
  TAAAAAGAGT GTGCTGCACA GATGTTGGGT GGTTTGCTTG TGGCCAGTCA GTTCCTCACG
  CCTACTAGAT ATCTCCCTTT CAAGGCTGAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss145548343	ENSMUSSNP2960346	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss319993869	CHEV_1_137746329	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs51794764					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135777490 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	1890 bp distal
Rr12645	regulatory region 12645	911 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr226	transcription start site region 226	1742 bp upstream
Tssr227	transcription start site region 227	307 bp upstream
Tssr9016	transcription start site region 9016	1764 bp downstream
Tssr9017	transcription start site region 9017	1726 bp downstream
Tssr9018	transcription start site region 9018	1708 bp downstream
Tssr9019	transcription start site region 9019	1675 bp downstream
Tssr9020	transcription start site region 9020	904 bp downstream
Tssr9021	transcription start site region 9021	884 bp downstream
Tssr9022	transcription start site region 9022	396 bp downstream
Tssr9023	transcription start site region 9023	322 bp downstream
Tssr9024	transcription start site region 9024	286 bp downstream
Tssr9025	transcription start site region 9025	within coordinates
Tssr9026	transcription start site region 9026	195 bp upstream
Tssr9027	transcription start site region 9027	305 bp upstream
Tssr9028	transcription start site region 9028	345 bp upstream
Tssr9029	transcription start site region 9029	925 bp upstream
Tssr9030	transcription start site region 9030	960 bp upstream
Tssr9031	transcription start site region 9031	1019 bp upstream
Tssr9032	transcription start site region 9032	1602 bp upstream
Tssr13890	transcription start site region 13890	1977 bp upstream
Tssr13891	transcription start site region 13891	1732 bp upstream
Tssr13892	transcription start site region 13892	1665 bp upstream
Tssr13893	transcription start site region 13893	1648 bp upstream
Tssr13894	transcription start site region 13894	899 bp upstream
Tssr13895	transcription start site region 13895	855 bp upstream
Tssr13896	transcription start site region 13896	328 bp upstream
Tssr13897	transcription start site region 13897	300 bp upstream
Tssr13898	transcription start site region 13898	985 bp downstream
Tssr13899	transcription start site region 13899	1053 bp downstream
Tssr13900	transcription start site region 13900	1063 bp downstream
Tssr13901	transcription start site region 13901	1624 bp downstream