rs51794801 SNP Detail

Summary

• ID
  rs51794801
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69420741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCCTGCA GGTAAGAATC
  AGGAGGAAAT ACCAAACGAG GTAATGACTC TTAGAGGACA GTAGATCAGC AAGCATTCAG
  CTGCCCCAGT CCTTCCGTTA TCTCAGCAAC CATGATTATA CCAAGCTCTA GCTAGACAAA
  GTGGGGGAAG GGAGCATATG TAGAGTCAGG ATCCATATAT GATCCCTGAA GGAAAATAAA
  W
  GGAAACATTT ACCTCAGAGT CATAGTCACA TGCAAATGAA ACCTATGTTA GTGTTTGAGG
  ATATGCAACA GATTTTAGCC ATGGTTCTCC TCAAAAAAAA AACAAAAAAA ACAAAAACAA
  AAACAAAAAC CCTAGGTCTC CCCTTCATCA TCAGGTCCCC AGAACTTGAC ACATAGCATT
  CCTTCAATAA ATATTTGGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146729524	ENSMUSSNP1353584	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320331747	CHEV_2_69428454	CHEVERUD	SCREENING_POP	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51794801					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69420741 () rs orientation: forward

Symbol	Name	Function Class
Rr373310	regulatory region 373310	365 bp upstream
Rr558431	regulatory region 558431	238 bp proximal
Rr558432	regulatory region 558432	1676 bp proximal