rs51795243 SNP Detail

Summary

• ID
  rs51795243
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:51444817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTCTTTT GTAATTCATT
  AAATTCTACA ACCCAAGTCC AAAATTTACT ACTTTTTAGA TTTAAAAAAA ATTTAAAAAA
  CCTGTTTCCA AATTCACCAC TTCCAAGATT CAGTTTCTGA AAAGTGGCAT ATTTGCTTTT
  CCCTGAGCTG CCCCCTCTGG TGTTAATTGT AAGTATCTCA AGATGAAAAA AAAAAATCCT
  R
  CAACTCTGAA ACAAGCTCCA TGAAGAATGC TGAAACTCCA GATATCACCT TAAATCTGGT
  TTTGTCAGGC ACTTAATACT GGCTTTCCAA TAGCTAAGTA CAAAAACTTA TCAAGATGTT
  CATAAATTAG GTCATACTAT CCAGGACCTA TGACTGCACA ACGAAATGAA AAAGCAAAAT
  TATAAAACAA ATCCGTTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss133189242	ENSMUSSNP840760	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs51795243					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:51444817 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17402	CpG island 17402	1008 bp proximal
Gm67572	predicted gene, 67572	1593 bp upstream
Hnrnpa2b1	heterogeneous nuclear ribonucleoprotein A2/B1	within coordinates
Rr379347	regulatory region 379347	478 bp upstream
Rr630212	regulatory region 630212	within coordinates
Rr630213	regulatory region 630213	1103 bp proximal
Rr630214	regulatory region 630214	1925 bp proximal
Tssr56443	transcription start site region 56443	1591 bp upstream
Tssr60939	transcription start site region 60939	1612 bp upstream
Tssr60940	transcription start site region 60940	1433 bp upstream
Tssr60941	transcription start site region 60941	1149 bp upstream
Tssr60942	transcription start site region 60942	1002 bp upstream
Tssr60943	transcription start site region 60943	892 bp upstream
Tssr60944	transcription start site region 60944	845 bp upstream
Tssr60945	transcription start site region 60945	16 bp upstream
Tssr60946	transcription start site region 60946	614 bp downstream
Tssr60947	transcription start site region 60947	1999 bp downstream