rs51796560 SNP Detail

Summary

• ID
  rs51796560
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66903108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAT TTTGTGTTAG CAATCAACTA
  T
  TGACAGCCCA CTGAGTAGGA CATAC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144520411	ENSMUSSNP4863125	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss319758751	CHEV_1_66910523	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51796560					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66903108 () rs orientation: forward

Symbol	Name	Function Class
Acadl	acyl-Coenzyme A dehydrogenase, long-chain	672 bp upstream
Cpgi339	CpG island 339	210 bp distal
Rr412477	regulatory region 412477	1820 bp distal
Rr412478	regulatory region 412478	683 bp distal
Rr412479	regulatory region 412479	182 bp distal
Rr412480	regulatory region 412480	1783 bp proximal
Tssr12011	transcription start site region 12011	690 bp upstream
Tssr12012	transcription start site region 12012	664 bp upstream
Tssr12013	transcription start site region 12013	652 bp upstream
Tssr12014	transcription start site region 12014	634 bp upstream
Tssr12015	transcription start site region 12015	614 bp upstream
Tssr12016	transcription start site region 12016	599 bp upstream