rs51797341 SNP Detail

Summary

• ID
  rs51797341
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26492284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTAC TGCTGCAAAG GTGACTATAT
  C
  TCGGGCTTTA CTTGACAATT GTAAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss137438973	ENSMUSSNP4510898	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss323950899	CHEV_12_27127150	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51797341					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26492284 () rs orientation: forward

Symbol	Name	Function Class
D12Mit219	DNA segment, Chr 12, Massachusetts Institute of Technology 219	1172 bp distal
Rr464136	regulatory region 464136	1837 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	461 bp downstream
Tssr112998	transcription start site region 112998	1456 bp upstream
Tssr112999	transcription start site region 112999	1503 bp upstream
Tssr113000	transcription start site region 113000	1627 bp upstream
Tssr115902	transcription start site region 115902	572 bp downstream
Tssr115903	transcription start site region 115903	904 bp downstream
Tssr115904	transcription start site region 115904	921 bp downstream
Tssr115905	transcription start site region 115905	1226 bp downstream
Tssr115906	transcription start site region 115906	1354 bp downstream
Tssr115907	transcription start site region 115907	1409 bp downstream
Tssr115908	transcription start site region 115908	1449 bp downstream
Tssr115909	transcription start site region 115909	1535 bp downstream
Tssr115910	transcription start site region 115910	1587 bp downstream
Tssr115911	transcription start site region 115911	1637 bp downstream
Tssr115912	transcription start site region 115912	1651 bp downstream
Tssr115913	transcription start site region 115913	1686 bp downstream
Tssr115914	transcription start site region 115914	1738 bp downstream
Tssr115915	transcription start site region 115915	1767 bp downstream
Tssr115916	transcription start site region 115916	1824 bp downstream
Tssr115917	transcription start site region 115917	1870 bp downstream
Tssr115918	transcription start site region 115918	1889 bp downstream
Tssr115919	transcription start site region 115919	1916 bp downstream
Tssr115920	transcription start site region 115920	1943 bp downstream