rs51797354 SNP Detail

Summary

• ID
  rs51797354
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42209369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGTCCCT TACCTGCTGG
  ATGAATTAAT CCCTCAAGAA TTACAGTTCT TTTGTGGTGA CCTGCTAAAG GCTGATATTA
  ATCATTTCTT AATAGGAACT AGGGAATCTG AAATGGATGG TTGATGTTTT CTGATAATTG
  ATGTTATGTT CATTTGTTCA AAAAAAGAAT TCCTCCCCGA TCCTTTACGT GTCTCTGGGA
  R
  ATTGAACCCT GGGCTTCAAG CATGCTAGTG AGATGTCGTG TCAGTGAGCT TTGCTACTGT
  ATGCTGTTGG AGGTTTACTT CTGTACATTA TATCAAGACA AAGAAGTGAA AGAAAGTTGG
  AACTCACATT TATATACTAC TTTACTTGCA GAAGTTAGAA CAAACTGACT TATTTTCAAC
  AGAGAAATAT CCTGTCAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52631029	NES15521420	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51797354					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52631029	NES15521420	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42209369 () rs orientation: forward

Symbol	Name	Function Class
Hivep1	human immunodeficiency virus type I enhancer binding protein 1	within coordinates
Rr271793	regulatory region 271793	1032 bp proximal
Rr281297	regulatory region 281297	1968 bp distal
Rr286087	regulatory region 286087	1003 bp proximal