rs51797364 SNP Detail

Summary

• ID
  rs51797364
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99760125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCTGCTTA GATCTCACCT GCTACACTAG GGGATTGGAG
  ATCCAGAGAT ACTAATTCTA CTGGGTGATG GTAGCTGCTT TGGAAAGAAA TGAGAGAAAT
  R
  ACCGTGTTTG CAGAGTGAGG ACTCACCAGC CACACTTAGA GGTTTAGGCC ATTGTAGTAC
  AACTTCTCAA CTTCTTGGAC ATTGCTTAAT GAGGGATCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136852150	ENSMUSSNP840279	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss323137474	CHEV_9_99778491	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51797364					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99760125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	1602 bp distal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	1348 bp downstream
Rr685464	regulatory region 685464	1913 bp distal
Rr685465	regulatory region 685465	1412 bp distal
Rr685466	regulatory region 685466	within coordinates
Sox14	SRY (sex determining region Y)-box 14	1902 bp upstream
Tssr91083	transcription start site region 91083	1879 bp upstream
Tssr91084	transcription start site region 91084	1860 bp upstream