rs51797547 SNP Detail

Summary

• ID
  rs51797547
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156133637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGAGAACT CTGTGACTGG GAAGGGTAAG
  ACAAGGCCTT TGGATAGGAG CAGGTCAGCC TTAAGGAGGA AGACAGGTCT GTGGATTGAC
  TGACTGACAG CAAAGAAAGG CCAAATATGG GCATCATGTC TATCAATTCT ACCCCTACTG
  R
  ATCAACAGGA GAAGAAAAAA AAAATCCAAA AAGTTCTGTA GGGTGGAGAG AAATCCTGGA
  ATGAGAAACT CATGCCACTC TAGAGGACAG GCTGCAAAGA TGGAAGAATC CAGGAGTGCC
  TGGAGATCCC TTCCCAACCG AGAAAAGGAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148124996	ENSMUSSNP7161145	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A		G
ss321444912	CHEV_4_155423289	CHEVERUD	SCREENING_POP	f	SNP				G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs51797547					SNP	A	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156133637 () rs orientation: forward

Symbol	Name	Function Class
Rr93557	regulatory region 93557	1164 bp proximal
Rr106662	regulatory region 106662	552 bp proximal
Tssr44999	transcription start site region 44999	1208 bp upstream
Tssr45000	transcription start site region 45000	1285 bp downstream
Tssr45001	transcription start site region 45001	1318 bp downstream
Tssr45002	transcription start site region 45002	1553 bp downstream
Tssr45003	transcription start site region 45003	1582 bp downstream
Tssr45004	transcription start site region 45004	1605 bp downstream
Ttll10	tubulin tyrosine ligase-like family, member 10	within coordinates