rs51798427 SNP Detail

Summary

• ID
  rs51798427
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23943604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGAGGTT CCTATCCACA
  GTAGAGGTCC ACCAAGGAGA TATATATGTT AGGAATATTT TGGAAAAAGG CCAAGCCACC
  TTAAAGGCCC ACGTGATTAC TGCGATCCAA GATCTGCATC TACATGACAT TTACTGCTCA
  TGAGAATCCA TTGTTTTCTG CTGGCCTCAG GGAGCGGCTG GCACATTACC TAATAGCAAA
  S
  AAATACCTCC CAAAGGAATT TAGAGGAGGG ATAAAATGAT CAATCACCAT CAAGAGAGAT
  CACATTTTCT TGTTCTTCTG TCTGCTCTCC TCCTGAAACT TTCCAGGATG TATTATCCAT
  GAATTATATG CATTAGTTTA AGATGAAGCT ATGCTGAATA GTTCATTTTT CTACCAGAAA
  TTCACGGTTG GAAAACAGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	MSM/Ms	SM/J
ss148808339	ENSMUSSNP2607309	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
ss324291494	CHEV_13_23851490	CHEVERUD	SCREENING_POP	f	SNP		G		C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	MSM/Ms	SM/J
rs51798427					SNP	G	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23943604 () rs orientation: forward

Symbol	Name	Function Class
4930558J22Rik	RIKEN cDNA 4930558J22 gene	1983 bp upstream
Cpgi5376	CpG island 5376	1058 bp proximal
Gm61378	predicted gene, 61378	1827 bp upstream
H4c1	H4 clustered histone 1	1174 bp downstream
Rr388131	regulatory region 388131	1763 bp downstream
Rr388132	regulatory region 388132	175 bp upstream
Rr475944	regulatory region 475944	1493 bp distal
Rr475945	regulatory region 475945	1599 bp proximal
Tssr121748	transcription start site region 121748	1992 bp upstream
Tssr121749	transcription start site region 121749	1546 bp downstream
Tssr121750	transcription start site region 121750	1588 bp downstream
Tssr121751	transcription start site region 121751	1602 bp downstream