rs51798885 SNP Detail

Summary

• ID
  rs51798885
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153794387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCAGGTTTC TCACCTGGCT CCCTGGGGCT CAGGATGGGT
  GTGGATACCA GATTCTGGTG AGGGGACATA AGAGGGTCAA GGATGACATA CCCTGAACCC
  Y
  GGTGTGATGG GCCTGCCTGC ACAGTCTTGC CTTGGCCTGG CTACTCCTGG GCTGGGTGAC
  TATGCAGTGA TGGAGTTTCA GCTCAGGTTC TTGCATATG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148011226	ENSMUSSNP3916743	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320566737	CHEV_2_153778203	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51798885					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153794387 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	Intron
Rr567759	regulatory region 567759	397 bp proximal
Rr567760	regulatory region 567760	605 bp proximal
Rr567761	regulatory region 567761	1529 bp proximal