rs51799197 SNP Detail

Summary

• ID
  rs51799197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127691748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATCCAATG CCCTGTCCTG
  GTATGCAGGT ATACATGCAA TAGAGCACTC AGATACATAA AATAAATAAA CCTTAAAAAA
  AGAAAAGACT AGTACCCAAA ATGTCTTTAG GCCCAGCCAA GGAATTAAAT AGGCAGGGAC
  TTACAGGCTT ATTTTAAAAA GTGGTTTTGT TTTGTTTGGG CTAGGCAGAA GCTTGTCCCT
  Y
  TTGCTCACAC CTAACACACA CACTCTCTCT CTCTCTGTGT ACTCAGTGTC TCACAAAAAC
  ACCCTTTCTT ATACCCAGTC TGTTACACTT TGTAATGTAA CCTAGTTTCT TTCTTACAAC
  AGCATCTCAC AAATCCTTCT TAATGGTTTC TGCCAAACAT ACACCGTCCC TAGAGACAAG
  AAAAATATGC TTTTGGACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135874559	ENSMUSSNP5610538	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320958020	CHEV_3_127601017	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51799197					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127691748 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	1576 bp distal
Fam241a	family with sequence similarity 241, member A	1776 bp upstream
Rr398009	regulatory region 398009	1526 bp downstream
Rr584897	regulatory region 584897	1285 bp distal
Tssr35608	transcription start site region 35608	1866 bp upstream
Tssr35609	transcription start site region 35609	1829 bp upstream
Tssr35610	transcription start site region 35610	1762 bp upstream