rs51799408 SNP Detail

Summary

• ID
  rs51799408
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160944161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGACTTAT GTATGTGGTG ATGGCAACAC
  GGTGTGGTGG CTaaaatctc gatgcaccta ggagacaagc cttcagaccc atctgtgaac
  gattatctag actaggttaa ctaaggtggg aagatccctc ttaaaggtgg gcactgccag
  W
  ccctggcctg gagtcctaaa gaaagctgag ggtcagcgtt cctcactcta tgcctgactg
  aatgcaatgt gaccagcttt ctcaagttct ttccaggact cccctgactt ggtgataaac
  tcaccctcaa ctatgagccT GTGTTCCAAG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145906476	ENSMUSSNP1301727	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320080361	CHEV_1_163046722	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51799408					SNP	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160944161 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Klhl20	kelch-like 20			Intron
				Noncoding-Transcript-Variant
Rr421756	regulatory region 421756			1727 bp distal