rs51799910 SNP Detail

Summary

• ID
  rs51799910
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101263515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCTTCTG AAGCGGCAGA
  GTCAGGGCGG CCTTGAACAT GGGGACACGG AGGCCTTTGA GCCCTGTGGT TTTCCCAAAG
  CTTTGACTGT CCCCCTCACC TCCTCTCTCT CCCACCAGCC TTGGAGAGTC TCTTGTTTCA
  GTGGGTGGAG TTTAAGTCAT CTTTAACCAT GGCCTGCTAA GGCAGAAAGG CTCCTCCCTG
  Y
  GATTTCTACA GGCACTCACA ACCTCTGGAT CACAGTTAGG CACCCAGAAG GCTGCGTGCC
  TACTTCTGTT CTAGCTTCAG TTCCCACGGG AGTGTATCCT AGGATGATGG AGACTTCCTG
  GCTTCATCCT CACCCTGCCT ATCCTTTTGG GGGGTCCCTG CCTTCCTCCA TTTCATGTGT
  TCTCTCTGTT CCCCCTGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63630173	NES17037272	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51799910					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63630173	NES17037272	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101263515 () rs orientation: forward

Symbol	Name	Function Class
Gm35853	predicted gene, 35853	within coordinates
Krt80	keratin 80	within coordinates
Rr311441	regulatory region 311441	1114 bp distal
Tssr133285	transcription start site region 133285	866 bp downstream
Tssr136556	transcription start site region 136556	1068 bp upstream
Tssr136557	transcription start site region 136557	1049 bp upstream
Tssr136558	transcription start site region 136558	1015 bp upstream