rs51800163 SNP Detail

Summary

• ID
  rs51800163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40246780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGAAAACAAA GAAAAAAATG TTTGTAGTAT AATTAAATGT
  CAGTAGGTTT AAGAGTCAAA ATCATAAAAC TTTAGGGATT TTATAATATT GTGTTGTACA
  Y
  GTCACTAATT TTTTTTTTTT TTTTTTTTAA ATAAGGTTTC ACTATATCTC TCTGTGGTCT
  GGAACTCACC TTTTAGACCA GACTGGTTTC CAGCTTACAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52244082	NES15264559	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51800163					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52244082	NES15264559	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40246780 () rs orientation: forward

Symbol	Name	Function Class
Cdk19	cyclin dependent kinase 19	within coordinates
Rr214650	regulatory region 214650	1380 bp distal
Rr214651	regulatory region 214651	180 bp distal
Rr219330	regulatory region 219330	1780 bp distal
Rr222642	regulatory region 222642	909 bp distal
Rr384549	regulatory region 384549	478 bp upstream