rs51800177 SNP Detail

Summary

• ID
  rs51800177
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98852882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGTGGGA ACTGTAGCTG
  CTCTCCCCAA GGCTGCTCAG CCAGAGACTG TGGTCCTTGC TCAATTGCCC CTTGGGACAA
  AAATGCCTTG CTTTCACTCC TAGGAAATAG ATTACAGTGG CACTCTCTTG CTATGTAGAA
  AGGCTCCGTT GTCAGCAAGG AAGATCTCTA TATAGTGAGT CTCCGAGCTG CGGACCACTG
  R
  TAATTTGCAG GATGAAATTT TAGAGGAAAA GAGATATTTG TTTGGGCACC GAGCTAAAAA
  TGTGGATTTT GACAGATGGC TTCCCTTTCA GTAGCAGAGT CTTGGTCGCC CGCAGCTCTG
  TTTGCGAGCC CTGTGGAGTC CATTCATTCC GGCTGGGCTC CCAAGGCGCA GGGCGCTGGT
  GTGGGAGGGA GAGCCTTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63622715	NES17045865	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51800177					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63622715	NES17045865	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98852882 () rs orientation: forward

Symbol	Name	Function Class
B430209F14Rik	RIKEN cDNA B430209F14 gene	380 bp upstream
Cpgi7685	CpG island 7685	1285 bp distal
Gm49450	predicted gene, 49450	1450 bp upstream
Gm56698	predicted gene, 56698	within coordinates
Rr370012	regulatory region 370012	1674 bp downstream
Rr404613	regulatory region 404613	1230 bp downstream
Rr509236	regulatory region 509236	1734 bp distal
Rr509237	regulatory region 509237	1461 bp distal
Rr509238	regulatory region 509238	1341 bp distal
Rr509239	regulatory region 509239	808 bp distal
Rr509240	regulatory region 509240	193 bp proximal
Tssr132970	transcription start site region 132970	1927 bp downstream
Tssr132971	transcription start site region 132971	1232 bp downstream
Tssr136334	transcription start site region 136334	1482 bp upstream
Tssr136335	transcription start site region 136335	1468 bp upstream
Tssr136336	transcription start site region 136336	1441 bp upstream
Tssr136337	transcription start site region 136337	1410 bp upstream
Tssr136338	transcription start site region 136338	1394 bp upstream
Tssr136339	transcription start site region 136339	1342 bp upstream
Tssr136340	transcription start site region 136340	1325 bp upstream
Tssr136341	transcription start site region 136341	1302 bp upstream
Tssr136342	transcription start site region 136342	458 bp downstream
Tuba1a	tubulin, alpha 1A	1500 bp upstream