rs51800999 SNP Detail

Summary

• ID
  rs51800999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76461867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATTAAAA CAAATCTTAA
  ATTCTGGAAG ACTATGAAAT AGGTATAAGC AAAACAGCAA CAATAAACTT TAGAAACTAT
  TATAAAATCA GTGAGTATCT TGTTGTTATT TGCCTTTTTG GCTTTAAAAA ATATTTATGT
  CACTGTGCTC AGTGTCTTAG TTAAGTTTCT ATTGCTGTGA TACTACACCA TGACCACAGG
  Y
  GATTTGGGGA GAAAGGGGTT TATTTTGGCT TACATGTCCC TATCACAGTT CATCACTGAG
  GAGAGCCAAG GCAGGAACTC AAGCAGGGCA GCAATCTGAA GGCAGGAACA AGTGTAGAGG
  CTGTGGAGGG ATGCTGCTTA TGACCTGATC CTCATGACCT ACTCAGCCTC CTTGCTTATA
  CAACTAGGGA CCACCTGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147535226	ENSMUSSNP5470755	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51800999					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76461867 () rs orientation: forward

Symbol	Name	Function Class
Gm58741	predicted gene, 58741	293 bp downstream