rs51801105 SNP Detail

Summary

• ID
  rs51801105
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:79041657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTACTTGGG AGGATGAGGC
  AGGGAGGCGG TCACAGCACT GTGGGTTTTA GGCCAGCCCT GAGGACATAG TGAGACTTCA
  TTTCAAACAG CCAATCTAAA TAAATGAATA GTAAAATACC CAGTCAACAC AGATAATGAT
  CAAGGTACAT CACTCACTTC CCAGATGAAA GAGGAGAAAT GAGGTCTTGG GGCTCCAAAG
  M
  AAAACCAAGT ACAGAAAAAA TGCCTCTAGA AACCATCAAG CTTATTCATG TGGGCTAACT
  ATGACAAGGA GGGAGCAGGG CATAGCCTAG TCTAGCAGGT ATGCCCCAGT TTCATCTCAG
  AGCCATAGAG TCCAAGAGTC CTTCAGGGGA TGAACTGGAA GCCAGGACTG GGGGAGGCAA
  GAAAGGCACT GGCAAGTGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61653823	NES17604398	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C	A	C	C	A		A	C	C	A		C
ss324107632	CHEV_12_80095870	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51801105					SNP	C	C	A	C	C	C	A	C	C	A	A	A	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61653823	NES17604398	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:79041657 () rs orientation: forward

Symbol	Name	Function Class
D12Mit4	DNA segment, Chr 12, Massachusetts Institute of Technology 4	1293 bp distal
Rr387477	regulatory region 387477	1257 bp upstream
Tmem229b	transmembrane protein 229B	within coordinates