rs51801891 SNP Detail

Summary

• ID
  rs51801891
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123259983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAAATGT GAACATGAAT
  TTTTAAATAA TTTCACTTTG AACCTACTGA GCAGGTTCTA CTTGCGCAGT AGATACAAGT
  ACAGGTGAAA TCCAGTTTAT AGAAGAGAAC ACAGAGAAAA TGGGGCTCCA GGAAGAGTGG
  ACTAGATCAC AATCTGTTAG GAACTGAAGT TTGACCGGCC TTTCCATATG GAGATGTCCT
  Y
  GCTGAAGGCC ATGCCATTCT CCCAAGCGGC AGGTAAGTTT AAAGACTCAA AGATGCATCT
  TCCTCACTGT TGGAGAACAC AGAAGTGATC TATGTACTGA TAGATAGATA AGCTAGACCC
  AAGGATGTAG AAAGAACAGG ATGACATAGT GACCATTAAA GTCTCTTTAT ACAGACATCT
  GCTTTCTACC TGTTCCTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936905	NES16189351	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51801891					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936905	NES16189351	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123259983 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	244 bp downstream
Tssr58809	transcription start site region 58809	368 bp upstream
Tssr58810	transcription start site region 58810	394 bp upstream
Tssr58811	transcription start site region 58811	430 bp upstream
Tssr63019	transcription start site region 63019	1452 bp upstream
Tssr63020	transcription start site region 63020	520 bp upstream
Tssr63021	transcription start site region 63021	442 bp upstream
Tssr63022	transcription start site region 63022	403 bp upstream
Tssr63023	transcription start site region 63023	348 bp upstream
Tssr63024	transcription start site region 63024	250 bp upstream
Tssr63025	transcription start site region 63025	218 bp upstream
Tssr63026	transcription start site region 63026	197 bp upstream
Tssr63027	transcription start site region 63027	159 bp upstream
Tssr63028	transcription start site region 63028	134 bp upstream
Tssr63029	transcription start site region 63029	106 bp upstream
Tssr63030	transcription start site region 63030	50 bp upstream
Tssr63031	transcription start site region 63031	20 bp upstream
Tssr63032	transcription start site region 63032	within coordinates
Tssr63033	transcription start site region 63033	14 bp downstream
Tssr63034	transcription start site region 63034	33 bp downstream
Tssr63035	transcription start site region 63035	54 bp downstream
Tssr63036	transcription start site region 63036	108 bp downstream
Tssr63037	transcription start site region 63037	138 bp downstream
Tssr63038	transcription start site region 63038	175 bp downstream
Tssr63039	transcription start site region 63039	234 bp downstream
Tssr63040	transcription start site region 63040	292 bp downstream
Tssr63041	transcription start site region 63041	341 bp downstream
Tssr63042	transcription start site region 63042	366 bp downstream
Tssr63043	transcription start site region 63043	376 bp downstream
Tssr63044	transcription start site region 63044	398 bp downstream
Tssr63045	transcription start site region 63045	489 bp downstream
Tssr63046	transcription start site region 63046	508 bp downstream
Tssr63047	transcription start site region 63047	531 bp downstream
Tssr63048	transcription start site region 63048	559 bp downstream
Tssr63049	transcription start site region 63049	574 bp downstream
Tssr63050	transcription start site region 63050	598 bp downstream
Tssr63051	transcription start site region 63051	650 bp downstream