rs51801911 SNP Detail

Summary

• ID
  rs51801911
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:78248588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGAGGCTG CTGAAAGGGG
  TCGCTCACTG AGGACCAGAA GCACAGAAAC CGCTCTGCAA AAGGACATCC TGGGAACGGG
  GTGTCGAGAA CACACCTTTA AGAACACGGG ACACCAGTAA AGGCCGGCGG AAGAGCACCA
  GCAAGCTACA GAAGGAAGAA AAGCGGGCAG ACCGATCGGG TCAGCCTAAG CCAGTAGAAC
  M
  GCAGACGAAG GCCGGATCCT GCGGGGCCCA CGCAGCGGAG CTCGCCTGCC CTCCCGCCCG
  CGTACCTGTC GCCCGCTGCG ACCTGGCCTC GATGTACTTC CGCAGCTTCC GCAACGCGCG
  GTCCCGCGTC ACCTGTTCAT TGCCCGCCAG GCGCTGCGCC AGCTGGATCT CCGGCGGGAG
  CGGCACTCCG GGAACCATGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss52381607	NES15270739	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs51801911					SNP	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52381607	NES15270739	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:78248588 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1780	CpG island 1780	within coordinates
Rr225082	regulatory region 225082	within coordinates
Rrp1	ribosomal RNA processing 1	within coordinates
Tssr3266	transcription start site region 3266	166 bp downstream
Tssr98302	transcription start site region 98302	97 bp downstream
Tssr98303	transcription start site region 98303	195 bp downstream