rs51801974 SNP Detail

Summary

• ID
  rs51801974
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53766094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGGCACA CAGTTTTATG
  CTTTATTGTT TTGTGTATTG GTCAAAGAAG ATTTAGGAGA ACTCTTTGAG CACTGACACA
  CCACGATTCA CAGTTCTTCT TTTCTGGAAG TTGAAGTGTC TGTAAAGCAG TGTATCAGTT
  GCCCTTCTCT CAGTGAAATA ATTACCACAA AGATACTCAG ATCCTAAAGT TCCCTTCTCA
  K
  CATGCTGCCC TTCCTTAGTC AGTCTTGGCG TCTGCTTTTA AGGATCTCCT TCTTATTCCT
  CCACAGTCAC CTTCCAGCTC AGCCGCTGTT TATTTAACCC AAACACTCTG CCTTGTATGG
  AACCTTCCAG GATTATGCTT CTTGGGCTGC TTACATCAGC TTTGGTCCCA AGGGGACCAT
  TCTCTCTTGT GATTAAGTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss137758467	ENSMUSSNP6999809	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs51801974					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53766094 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	507 bp proximal
Rr263732	regulatory region 263732	594 bp proximal