rs51802258 SNP Detail

Summary

• ID
  rs51802258
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42453536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGCAGAG GCAGAGGCTT
  ACCAGTGGCC CTGGGCCTCG GGTGTGGGTG TGGGAGGGAT GCTGGTTCCT GCTTCTTCAA
  TGTCTCCAGC TCTTAGTCCA GAGTCTCCTA AGGGACAGAG TTCTTAGTGA CCTAAAGCTG
  CTGCTGCTGC TGCTGCTGCT GCTGCTGTGT CTCCCCTACT GAGATTCCCA GAGAGGTCAC
  W
  AGGCCTAAGC ATGTCTCTGT CCACAGCGTG GGTATTGCTA TCAAGTCTGC CTTTTGATTG
  TAGAGGTGAA GAAATAAATG GTTGCATGGA CTGGATTGAG TCTATTTTGG CCTCTACTCC
  CAGGGAAAAC TGAAGTCAAA CAAGACGGGA TGAAGAAGGG ACCTTTGTGG TAGCATCCTA
  GGGAAACCAC TCTGCGTGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52629874	NES15518699	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51802258					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52629874	NES15518699	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42453536 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5505	CpG island 5505	1490 bp proximal
D13Mit138	DNA segment, Chr 13, Massachusetts Institute of Technology 138	745 bp proximal
Edn1	endothelin 1	1416 bp upstream
Gm60910	predicted gene, 60910	within coordinates
Rr388326	regulatory region 388326	within coordinates
Rr478143	regulatory region 478143	971 bp distal
Rr478144	regulatory region 478144	312 bp proximal
Rr478145	regulatory region 478145	688 bp proximal
Rr478146	regulatory region 478146	1283 bp proximal
Tssr119437	transcription start site region 119437	1205 bp upstream
Tssr119438	transcription start site region 119438	1364 bp upstream
Tssr119439	transcription start site region 119439	1386 bp upstream
Tssr119440	transcription start site region 119440	1449 bp upstream
Tssr119441	transcription start site region 119441	1552 bp upstream
Tssr119442	transcription start site region 119442	1722 bp upstream
Tssr119443	transcription start site region 119443	1763 bp upstream
Tssr119444	transcription start site region 119444	1893 bp upstream